Server Aliases not working when connecting with SQL Compare/SQL Data Compare

When you try to connect to an instance using a server alias, you get the error message:

A network-related or instance-specific error occurred while establishing a connection to SQL Server.

and you are using an Alias in place of the SQL instance name.

This might happen because you don't have the Alias set in the 64-bit node of the aliases (SQL Compare and SQL Data Compare are 64-bit applications).

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