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Hello,
SQL Data Compare has an option to ignore whitespace (trim trailing spaces). The case sensitivity of comparisons are driven by the collation order on columns, so if the column collation of a text field is LATIN1_CI_AS, then the comparison will be case-insensitive, the way it should be. If this is unsatisfactory, the force binary collation option will override this and do a case-sensitive comparison.
We already have a feature request logged to be able to view columns without actually comparing them (SDC-121). I hope this will be considered, as a few people have asked about it.
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Also, how about a case-insensitive compare of text fields? A difference in a name should be material, not capitalization or whitespace.
Just my ideas for a future version -
Alan