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Hello,
Yes the baseline functionality is for exactly this scenario, please see the following resources.
Command: https://flywaydb.org/documentation/command/baseline
Example: https://flywaydb.org/documentation/usage/commandline/baseline
Config parameter: https://flywaydb.org/documentation/configuration/parameters/baselineVersion
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Another thought I had would be to continue both with version 301 and have database B ignore needing versions 1 - 300. Does flyway have this functionality or is there another method I need to go down?