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Thanks for your post.
There is not actually much you can do to speed up the performance of SQL Data Compare, you might be interested in looking at the following article, but I'm not sure it will be much help in your situation.
http://www.red-gate.com/supportcenter/C ... 000166.htm
Does the new server have particularly different hardware or SQL Server version to the old one?
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Anyway, since this process was completed, any comparison against a database on this server either takes 45+ mins or doesn't finish at all (database is about 115MB - largest table stores 150k rows)
Any ideas how I can speed this up?
Many thanks,
Hillsman