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I use a little trick to do that.
Create views on the system tables, and then include compare views feature.
You should always be very careful on doing this, and sometimes it can still be a big pain, because SQL uses INT fields with IDENTITY set, and you cannot easily insert new records.
I personally always use GUID's in all my databases, and I have no problem with synchronizations. / comments
I use a little trick to do that.
Create views on the system tables, and then include compare views feature.
You should always be very careful on doing this, and sometimes it can still be a big pain...