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We were receiving the same error and found that it was due to a single table that had changed schema and the comparison file no longer could reconcile the mappings. To fix, you can open the .sdc file in a text editor (I recommend Notepad++) and cut out the bad table nodes. Then you can open the file in RedGate, re-select the table, and re-compare. Hope this helps!
Thanks,
Kevin / comments
We were receiving the same error and found that it was due to a single table that had changed schema and the comparison file no longer could reconcile the mappings. To fix, you can open the .sdc f...