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Thanks for your post.
SQL Compare UI and the SQL Compare API do not have a backup before sync' option.
Database.SavetoDisk will enable you to create a snapshot of the schema, but it will not contain any data.
If you want to perform a backup before you do anything using the API, you could use the BackupCommand Methods of the RedGate.BackupReader namespace (see SQL Data Compare API help).
I hope this is helpful.
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Thanks