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There's a DLL in the ANTS install directory called RedGate.Profiler.UserEvents.dll. If you reference it in your project, you can place an event marker on the timeline by calling
RedGate.Profiler.UserEvents.ProfilerEvent.SignalEvent("A message");
You can use that to see when a particular line of code ran. This is described at the bottom of http://documentation.red-gate.com/display/APP8/Working+with+the+timeline#.
Unfortunately this doesn't let you bookmark regions at this time, though we're considering adding that capability in the future.
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In memory profiler there's a trigger API but I can't find anything in performance profiler - is there anything?
Thanks