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Thanks for your post.
Unfortunately, it looks like you probably can't split them out right now, as per this similar discussion: http://www.red-gate.com/messageboard/viewtopic.php?t=13595&highlight=trigger
Hopefully it's something that can be amended in the future, but for now the best results are obtained by using the same format of scripts as SQL Compare / SQL Source Control would generate.
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Thanks in advance,
Ruy