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Thanks for your post. This problem occurs because when you open a project, SDG will refresh the schema from the database. There isn't an option to disable this that I know of.
One possible workaround is that the project files are basically just XML. So you could open it up in Notepad (or a nicer editor if you have one) and amend the database name. It should then refresh the schema of the new DB you're referencing when you open the file.
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My workaround is to create an empty database with the name that is in the project, then change the name of the database in the project, then drop the empty one I created to get things started.
Is there an easier way to do this? Why does the database have to exist to open a generator project?
thanks,
Dan