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The CodeMetrics addin implements its command line behaviour itself by checking the CommandLine during the WindowManager_Load event, spotting the /Run, calling the addin code and then exiting.
There is (as far as I know) no general mechanism in Reflector for running commands and piping their output to a results file.
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Reflector.exe /Run:Reflector.CodeMetrics /Assembly:"dummy.dll" /OutputPath:"Report.txt"
Is it also possible to run Analyze from the commandline? I would need to get the output from "Depends on" into a text/xml file.
thanks!