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Unfortunately I cannot send you the schema, due to business confidentiality reasons. However, I don't think the schema is relevant: I have several disparate schemas on the problematic MySQL server --- the delay persists no matter which ones I select. Additional info which may help you reproduce the problem
The database drop-down list in the New Project window is populated quickly.
The connection method to the MySQL server is TCP/IP.
The user credentials are also used in MySQL Workbench 5.2.43 for developing code, without problems.
MySQL version is 5.0.51a-24+lenny5. / comments
Unfortunately I cannot send you the schema, due to business confidentiality reasons. However, I don't think the schema is relevant: I have several disparate schemas on the problematic MySQL server ...